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GC-MS Volatile Metabolomics Service

HS-SPME GC-MS workflow for volatile metabolite profiling
Broad in-house databases for plant and animal volatiles
Integrated analysis from statistics to rOAV-based interpretation
Rigorous QC system for reliable and reproducible results

What Is Volatile Metabolomics

Volatile metabolomics focuses on low-molecular-weight volatile organic compounds (VOCs) that contribute to aroma, flavor, stress signaling, host-microbe interactions, and diverse physiological processes. Compared with conventional non-volatile metabolomics, volatile metabolomics is especially valuable when the research objective involves odor-active compounds, volatilization-driven phenotypes, or chemical communication.

MetwareBio's GC-MS volatile metabolomics service uses a headspace solid-phase microextraction (HS-SPME) strategy coupled with GC-MS to profile volatile metabolites with broad coverage and high analytical sensitivity. Supported by extensive in-house volatile metabolite databases and a standardized data-analysis workflow, the service enables reliable qualitative annotation, semi-quantitative comparison, differential analysis, and biological interpretation for plant and animal samples.

Why Choose MetwareBio for Volatile Metabolomics?

GC-MS Platform for Volatile Profiling
Built on a dedicated GC-MS workflow for volatile metabolite analysis, suitable for aroma-active and chemically volatile compounds that are difficult to capture with routine LC-MS workflows.
Automated HS-SPME Enrichment
Uses automated HS-SPME with SPME Arrow for efficient pre-GC-MS enrichment and enhanced sensitivity in volatile metabolite profiling.
Broad In-house Databases
Backed by broad volatile metabolite databases, including 5,000+ plant volatile entries and 4,000+ animal volatile entries across multiple chemical classes.
Structured Identification Strategy
Compound annotation is supported by retention information, characteristic qualitative and quantitative ions, literature, partial standards, and internal database matching.
Rich Downstream Analytics
Analysis modules can include TIC inspection, class composition, relative content statistics, QC evaluation, PCA, clustering, correlation analysis, OPLS-DA, volcano plot, KEGG annotation/enrichment, and rOAV analysis.
Flavor-oriented Interpretation Capability
For food, crop, and aroma research, the workflow can extend beyond abundance comparison to odor-activity interpretation through relative odor activity value analysis.
Publication-ready Outputs
The pipeline is designed to generate organized result tables and publication-ready visualizations for reporting, presentations, and manuscript support.
Volatile Compound Coverage

MetwareBio supports volatile metabolomics with dedicated databases for both plant and animal research, covering broad VOC classes relevant to aroma biology, flavor science, physiology, and stress response.

 

Database

Coverage

Representative Chemical Classes

Plant volatile metabolite database

5,000+ compounds

Esters, terpenoids, nitrogen/sulfur/heterocyclic compounds, ketones, aromatics, aldehydes, alcohols, hydrocarbons, acids, amines, phenols, halogenated hydrocarbons, ethers

Animal volatile metabolite database

4,000+ compounds

Hydrocarbons, esters, ketones, nitrogen/sulfur/heterocyclic compounds, alcohols, aromatics, aldehydes, terpenoids, acids, amines, halogenated hydrocarbons, phenols, ethers

 
GC-MS Volatile Metabolomics Workflow

Our GC-MS-based volatile metabolomics workflow integrates sample consultation, matrix-matched preparation, automated HS-SPME extraction, GC-MS acquisition, compound identification, semi-quantification, and statistical interpretation into a standardized pipeline. Combined with in-house databases and robust data analysis, it enables reliable volatile compound profiling with outputs such as QC assessment, multivariate analysis, differential metabolite screening, and optional rOAV-based flavor interpretation.

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1
Sample Preparation
2
Metabolite Extraction
3
GC-MS/MS Detection
4
Identification &
Quantification
5
Data Analysis

Deliverables of the Volatile Metabolomics Service

Our volatile metabolomics service delivers a focused analysis package from raw-data quality evaluation and metabolite identification to QC assessment, multivariate statistics, differential metabolite screening, and intuitive visualization. Key outputs include TIC review, relative-content tables, PCA and OPLS-DA, volcano plots and heatmaps, with optional KEGG enrichment and rOAV-based flavor analysis when applicable. This integrated workflow supports efficient biological interpretation and publication-ready reporting. Contact Us for Demo

PCA
PCA
Clustering Heatmap
Clustering Heatmap
rOAV Analysis
rOAV Analysis
Flavor Wheel
Flavor Wheel
Flavoromics Sankey
Flavoromics Sankey

Project Experience of Volatile Metabolomics Analysis

MetwareBio has extensive project experience in volatile metabolomics across a wide range of plant tissues and diverse food-, biofluid-, and animal-derived samples. Supported by a standardized HS-SPME GC-MS workflow, rigorous QC strategy, and in-house volatile metabolite databases, our platform enables reliable volatile compound profiling across complex sample matrices. As shown in the representative project data below, we have accumulated broad sample coverage and consistently achieved high metabolite detection depth, with more than 1,100 compounds detected on average across representative plant tissue projects and up to 1,895 compounds in individual samples. This extensive practical experience strengthens data robustness, improves analytical confidence, and supports high-quality volatile metabolomics studies in flavor research, food quality evaluation, plant biology, animal physiology, and biomarker discovery.

Number of Volatile Compounds Detected in Plant-Derived Samples by GC-MS Volatile Metabolomics

Number of Volatile Compounds Detected in Plant-Derived Samples by GC-MS Volatile Metabolomics

Number of Volatile Compounds Detected in Animal-Derived Samples by GC-MS Volatile Metabolomics

Number of Volatile Compounds Detected in Animal-Derived Samples by GC-MS Volatile Metabolomics

Applications of GC-MS Volatile Metabolomics

Food flavor and quality research

Dissect aroma composition, key odor-active compounds, process-induced flavor shifts, cultivar differences, and storage-related changes.

Plant biology and crop science

Study floral scent, fruit ripening, defense responses, stress-induced VOC changes, and active volatile traits linked to crop quality.

Animal and biomedical studies

Profile volatile changes related to physiology, host response, metabolism, disease models, and biomarker exploration.

Microbe and fermentation research

Characterize volatile outputs associated with microbial metabolism, fermentation conditions, and strain-specific aroma signatures.

Case Study in GC-MS Volatile Metabolomics

Volatile metabolomics reveals key tea-scent compounds and release dynamics in Rosa gigantea

In this Nature Communications study, the researchers investigated how the characteristic tea scent of Rosa gigantea is formed and released. Using MetwareBio’s GC-MS volatile metabolomics, they profiled floral VOCs across tissues and time points, showing that R. gigantea accumulated more aroma volatiles than the comparison rose and identifying benzenoid/phenylpropanoid compounds such as DMT, eugenol, methyleugenol, and (E)-isoeugenol as major contributors to the tea-scent phenotype. The volatile data also revealed clear spatial and temporal patterns of scent release, linking fragrance intensity to flower opening and pollinator-related timing. Overall, the study concluded that the unique tea scent is driven by expanded phenylpropanoid-related pathways and their regulation, while volatile metabolomics played a central role in defining the scent phenotype, pinpointing key VOCs, and connecting chemical traits with biological mechanism.

 

History and prospect of rose fragrance domestication.

History and prospect of rose fragrance domestication.

Sample Requirements and Submission Notes for Volatile Metabolomics

Our volatile metabolomics service supports a broad range of sample matrices, including plant and animal tissues, biofluids, microbial and cell samples, root exudates, essential-oil extracts, and selected live samples without pretreatment. This broad sample compatibility enables flexible study design across plant biology, food science, animal physiology, microbiology and flavor research. To ensure reliable volatile profiling by HS-SPME GC-MS, samples should be tightly sealed and stored at −80°C as soon as possible after collection, protected from repeated freeze-thaw cycles, and shipped on dry ice to remain frozen during transit, thereby minimizing volatile loss and preserving sample integrity.

Sample Category Sample Examples Recommended
Sample Size
Minimum
Sample Size
Plant Solid Samples Stems, shoots, nodes, leaves, roots, flowers, fruits, callus tissue, soil, edible fungi, mosses, algae, and feed 1.5 g 500 mg
Oil-rich seed samples, such as sesame, peanuts, nuts, and various plant seeds 1 g 600 mg
Plant Liquid Samples Wine, vinegar, soy sauce, juice, fermentation broth, tissue fluids, and plant oils 1.5 mL 1 mL
Root exudates 10 mL 3 mL
Extracts (essential oils) 200 µL 100 µL
Animal Solid Samples Tissues, feces, semi-solid samples not suitable for pipetting (such as honey, shrimp paste, yogurt), molds, and mycelia 1 g 600 mg
Animal Liquid Samples Plasma, serum, milk, saliva, urine, exhaled breath condensate, rumen fluid and microbial cultures 500 µL 400 µL
Cell Samples Plant or animal cells 1 × 107 cells 1 × 106 cells
Special Samples Cultured samples containing liquid 1.5 g 500 mg
Swab samples 20 swabs 10 swabs
Live Samples
(No Pretreatment)
Flowers (<20 mm in diameter) 20 flowers 10 flowers
Insects (<20 mm in diameter), zebrafish organs, and insect organs 20 samples 10 samples
Biological duplicates: A minimum of 3 replicates is required; 3-6 replicates for animal samples; 6-10 replicates for clinical samples.

FAQ about Volatile Metabolomics Service

1. What is volatile metabolomics service and how does GC-MS volatile metabolomics work?

Volatile metabolomics service is designed to profile volatile compounds and volatile organic compounds (VOCs) in biological, food, and environmental samples. In a typical GC-MS volatile metabolomics workflow, volatile metabolites are enriched by headspace solid-phase microextraction (HS-SPME), separated on a GC system, and detected by mass spectrometry for compound identification, semi-quantification, and downstream biological interpretation. This workflow supports volatile compound profiling for aroma research, food quality studies, plant stress biology, animal physiology, and biomarker discovery.

2. Why is HS-SPME GC-MS widely used for volatile compound profiling and VOC analysis?

HS-SPME GC-MS is widely used for volatile compound profiling because it enables efficient enrichment of VOCs with strong sensitivity and broad compatibility across different sample matrices. In the current volatile metabolomics service, automated HS-SPME is combined with SPME Arrow and GC-MS/MS analysis, supporting robust VOC analysis under standardized analytical conditions. The workflow is therefore well suited for GC-MS volatile metabolomics projects requiring reliable detection of volatile metabolites in complex samples.

3. What sample types can be analyzed by a GC-MS volatile metabolomics service?

A GC-MS volatile metabolomics service can be applied to a broad range of sample types, including plant tissues, fruits, flowers, roots, seeds, fermented foods, edible oils, animal tissues, biofluids, microbial samples, cell samples, and other complex biological matrices. This broad sample compatibility makes volatile metabolomics and VOC analysis valuable for plant science, food science, nutrition, flavor chemistry, animal research, and translational studies. Broad sample handling is also consistent with the service-oriented webpage structure you are using as a reference for product positioning.

4. How should samples be stored and shipped for GC-MS volatile metabolomics and VOC analysis?

For reliable GC-MS volatile metabolomics and VOC analysis, samples should be tightly sealed and stored at −80°C as soon as possible after collection, protected from repeated freeze-thaw cycles, and shipped on dry ice to remain frozen during transit. In the current workflow, samples are stored at −80°C until needed, thawed on ice, and transferred into sealed headspace vials with TFE-silicone septa before HS-SPME extraction, which highlights the importance of airtight handling for minimizing volatile loss and preserving sample integrity.

5. Is volatile metabolomics quantitative or semi-quantitative?

This volatile metabolomics service is primarily based on internal-standard-assisted semi-quantification rather than absolute quantification for every detected compound. Relative content is calculated from the signal of each analyte and the internal standard, allowing robust comparison of volatile metabolite abundance across samples and experimental groups. This makes GC-MS volatile metabolomics especially useful for comparative VOC analysis, differential volatile compound screening, and flavor-related interpretation.

6. How are volatile compounds identified in GC-MS volatile metabolomics?

In GC-MS volatile metabolomics, volatile compounds are identified by integrating retention behavior, selected ion information, literature-supported references, and in-house database matching. The current workflow uses selected ion monitoring and combines retention consistency with characteristic ions to improve identification confidence. This database-assisted VOC analysis strategy strengthens volatile compound annotation and supports more reliable downstream biological and flavor interpretation.

7. What quality control measures are used in a volatile metabolomics service?

A professional volatile metabolomics service should include strict quality control throughout sample acquisition and data analysis. In the current workflow, pooled QC samples are inserted during instrumental analysis, TIC overlap is used to assess signal stability, and CV distribution is evaluated to measure repeatability and overall data robustness. The report also indicates that QC CV values are used during data preprocessing, helping ensure that GC-MS volatile metabolomics results are stable, reproducible, and suitable for downstream VOC analysis.

8. What bioinformatics analyses and deliverables are included in volatile metabolomics service?

A complete volatile metabolomics service typically includes data quality review, metabolite identification, relative-content tables, PCA, hierarchical clustering, correlation analysis, OPLS-DA, differential metabolite screening, and visualization such as volcano plots and heatmaps. When applicable, the workflow also supports KEGG annotation and enrichment as well as rOAV-based flavor analysis, which is useful for identifying key aroma-active compounds and interpreting flavor contribution. These outputs make GC-MS volatile metabolomics highly valuable for both VOC analysis projects and studies focused on flavor analysis, biological mechanism research, and biomarker discovery.

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Have a project in mind? Tell us about your research, and our team will design a customized proteomics or metabolomics plan to support your goals.
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