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Biomedical Sample Requirements for Metabolomics

Biological duplicates: A minimum of 3 replicates is required; 3–6 replicates for animal samples; 6–10 for clinical samples.

Biomedical Sample Classification

Liquid I Common
Plasma, Serum, Hemolymph, Whole Blood, Milk, Egg White
Liquid II
CSF, Interstitial Fluid, Uterine Fluid, Pancreatic Juice, Bile, Pleural Effusion, Follicular Fluid, Fallopian Tube Fluid, Postmortem Fluid, Culture Medium, Fermentation Broth, Tears, Bone Marrow (liquid)
Liquid III
Seminal Plasma, Amniotic Fluid, Prostatic Fluid, Rumen Fluid, Respiratory Condensate, Gastric Lavage, BALF, Urine, Sweat, Saliva, Sputum
Tissue I Common
Small Animal Tissues, Placenta, Blood Clot, Mycelium, Nematode, Zebrafish (whole fish), Bone Marrow (solid), Nail
Tissue II
Large Animal Tissues, Whole Insect Body, Wings, Pupa, Eggs, Large Fungi, Cartilage, Bone (solid)
Tissue III
Zebrafish Organs, Insect Organs, Whole Microinsect Body (e.g., Drosophila)
Solid I
Feces, Intestinal Contents, Lyophilized Fecal Powder
Solid II
Milk Powder, Microbial Fermentation Product (solid), Culture Medium (solid), Lyophilized Tissue/Plant/Egg Powder
Solid III
Honey, Nasal Mucus, Sputum, Fresh Egg Yolk
Solid IV
Sludge, Soil
Cell I Common
Adherent Cells, Animal Cell Lines
Cell II
E. Coli, Yeast Cells
Cell III
Small Amount of Fungal Mycelial Balls, Cyanobacteria, Large Amount of Bacteria, Slime Mold
Organelle I
Lysosomes, Mitochondria, Endoplasmic Reticulum
Organelle II
Exosomes, Extracellular Vesicles
Special Samples
Skin Tape/Patch, Test Strips, Swab, Hair

Sample Amount Requirements

Sample Class Recommended Minimum Untargeted (Plus) TM Widely Targeted Quant. Lipidomics
Liquid I100 μl20 μl
Liquid II100 μl20 μl
Liquid III500 μl50 μl
Tissue I100 mg20 mg
Tissue II500 mg20 mg
Tissue III20 units/
Solid I200 mg20 mg
Solid II100 mg20 mg
Solid III100 mg20 mg
Solid IV600 mg300 mg
Cell I1×10⁶5×10⁵
Cell II1×10¹⁰5×10⁸
Cell III100 mg/
Organelle I4×10⁷ cells / 0.2g1×10⁷ cells / 0.1g
Organelle II2×10⁹ / 40μg protein1×10⁹ / 20μg protein
Special I–IV1–2 pieces1 piece
Sample Class Recommended Minimum Energy Metabolism Tryptophan One-Carbon Amino Acids Organic Acids
Liquid I100 μl20 μl
Liquid II100 μl20 μl50–100 μl
Liquid III500 μl50 μl
Tissue I/II100–500 mg20 mg50–100 mg
Solid I/II100–200 mg20 mg50–200 mg
Solid III100 mg20 mg0.5–2 g0.5–2 g0.5–2 g0.5–2 g0.5–2 g
Solid IV600 mg300 mg
Cell I1×10⁶5×10⁵
Cell II1×10¹⁰5×10⁸
Organelle I/IIvariesvaries
Sample Class Bile Acids Neurotransmitters Steroid Hormones Oxylipins SCFAs FFAs Sugars
Liquid I50–100 μl50–100 μl50–100 μl50–100 μl
Liquid II50–100 μl50–100 μl≥100 μl50–100 μl50–100 μl
Liquid III
Tissue I/II50–100 mg
Solid I–III50–200 mg0.5–2 g0.5–2 g0.5–2 g0.5–2 g0.5–2 g
Solid IV200–600 mg600 mg
Cell I1×10⁷–2×10⁷5×10⁶–1×10⁷
Cell II

Plant Sample Requirements for Metabolomics

Plant duplicates: A minimum of 3 replicates is required.

Plant Sample Classification

Tissue Common
Root, Stem, Leaf, Fruit, Flower, Bud, Node, Callus, Seed
Liquid I
Root Exudate
Liquid II
Wine
Liquid III
Juice, Fermentation Broth
Liquid IV
Oils, Essential Oils, Honey, Nectar, Paste
Liquid V
Herb Extract, Herb Decoction, Plant Tissue Fluid, Phloem Sap, Leaf Intercellular Fluid
Cell
Fungal Mycelial Balls/Mycelium, Unicellular Algae, Bacteria (Pellet), Slime Mold
Organelle
Plant-derived Exosome-like Nanoparticles
Solid I
Lyophilized Plant Powder
Solid II
Sludge, Soil

Plant Sample Amount Requirements

Sample Class Recommended Minimum Widely Targeted / Flavonoid Quant. Lipidomics Plant Hormones Carotenoid Anthocyanin Sugars Org. Acids / AA Energy SCFAs FFAs
Tissue600 mg300 mg100–300 mg200–300 mg200–300 mg200–300 mg
Liquid I10 ml3 ml200–500 μl2 mL2 mL2 mL2 mL2 mL100 μl–2 mL2 mL
Liquid II5 ml50 μl200–500 μl2 mL2 mL2 mL2 mL2 mL100 μl–2 mL2 mL
Liquid III5 ml50 μl200–500 μl50–200 μl100–500 μl100–500 μl100–500 μl100–200 μl50–200 μl50–200 μl
Liquid IV500 μl100 μl10–100 mg50–200 μl100–500 μl100–500 μl100–500 μl100–200 μl50–200 μl50–200 μl
Liquid V500 μl200 μl50–200 μl100–500 μl100–500 μl100–500 μl100–200 μl50–200 μl50–200 μl
Cell100 mg/20–100 mg/500–600 mg/
Organelle2×10⁹ / 40μg1×10⁹ / 20μg////////
Solid I600 mg200 mg/20–100 mg50–100 mg50–100 mg20–100 mg20–100 mg
Solid II600 mg300 mg////600 mg

Sample Requirements for Proteomics

Sample Type DIA / DDA Label-free Peptidomics Phosphorylation Ubi/Ac/Suc Lactylation N-Glycosylation
Rec. Min. Rec. Min. Rec. Min. Rec. Min. Rec. Min. Rec. Min.
Normal Tissues
Heart, Liver, Spleen, Lung, Kidney, Brain, Intestine, Stomach, Pancreas, Gallbladder, Testis, Ovary, Breast, Prostate, Thyroid, Adrenal Gland, Lymph, Muscle, Blood Vessel
20 mg5 mg100 mg50 mg30 mg15 mg100 mg50 mg150 mg75 mg25 mg15 mg
Fatty Tissue, Skin, Synovium 200 mg100 mg1 g500 mg300 mg150 mg//////
Bone, Shell, Eggshell1 g500 mg1 g500 mg////////
Cartilage Tissue400 mg150 mg1 g500 mg////////
Hair500 mg200 mg1 g500 mg////////
Red Bone Marrow20 mg5 mg//30 mg15 mg100 mg50 mg150 mg75 mg30 mg15 mg
Yellow Bone Marrow50 mg20 mg//50 mg30 mg200 mg100 mg200 mg100 mg50 mg30 mg
Soft-bodied Insects
Fruit Flies, etc.
30 mg5 mg//30 mg15 mg100 mg50 mg150 mg75 mg30 mg15 mg
Sample Type DIA / DDA Label-free Phosphorylation Ubi/Ac/Suc Lactylation N-Glyco
Rec.Min. Rec.Min. Rec.Min. Rec.Min. Rec.Min. Rec.Min.
Young Tissue (Leaves, Petals, Callus)50 mg20 mg200 mg100 mg200 mg100 mg1 g500 mg1 g500 mg100 mg50 mg
Mature Tissue, Stems, Algae, Fungi500 mg200 mg2 g1.5 g500 mg300 mg2 g1 g2 g1 g250 mg150 mg
Bark, Roots, Fruits, Tubers1 g500 mg2 g1.5 g3 g1.5 g5 g3 g5 g3 g1.5 g1 g
Pollen, Anthers40 mg15 mg//////////
Lyophilized Plant Powder300 mg150 mg//////////
Sample Type DIA / DDA Label-free Phosphorylation Ubi/Ac/Suc Lactylation N-Glyco
Rec.Min. Rec.Min. Rec.Min. Rec.Min. Rec.Min. Rec.Min.
Primary Cells3×10⁶1×10⁶1×10⁷5×10⁶2×10⁷1×10⁷2×10⁷2×10⁷3×10⁷1.5×10⁷2×10⁷1×10⁷
Serum/Plasma (no enrichment)10 μl1 μl200 μl50 μl//////50 μl10 μl
Urine5 ml2 ml20 ml10 ml////////
Bacteria100 mg50 mg300 mg150 mg300 mg150 mg500 mg200 mg500 mg200 mg150 mg75 mg
FFPE Section15 slides (5–10 μm)//////////
Extracted Protein100 μg50 μg//500 μg200 μg5 mg3 mg6 mg4 mg500 μg250 μg

Sample Requirements for DIA Proteomics: IP, Pull-down, and SDS-PAGE Derived Samples

Technology Acceptable Sample Types Sample Requirements Our Intake MS-compatibility Notes Recommended Controls
IP / Co-IP / Pull-down Bead–Ab/bait–target complexes (bead pellet) Submit 20 μL bead pellets. Perform IP/PD from ~1×10⁷ cells. After final wash, rinse beads with PBS, remove excess liquid, ship on dry ice. On-bead digestion → LC-MS/MS Indicate the antibody used (host/isotype/clone) or pull-down bait format. Isotype IgG, beads-only, Input/Flow-through
Eluates (acid/peptide/competitive/denaturing) Submit ≤50 μL eluate with ~10–20 μg total protein. Use mild MS-compatible elution buffer. Do NOT use Laemmli buffer. Buffer exchange → digestion → LC-MS/MS Specify elution buffer composition. If high SDS, we perform acetone precipitation. Bait-only resin, free-ligand competition
SDS-PAGE Gel bands (clean excised pieces) Target band(s) clearly visible. Load ≥10 μg/lane. Provide gel image with MW marker. Ship with icepacks. In-gel digestion → LC-MS/MS Prefer Coomassie staining Blank gel piece and/or neighboring band as control

Sample Requirements for Transcriptomics

Sample Class Sample Type Recommended Minimum
Tissue SamplesPlant tissues (high nucleotide yield): young leaves, flowers, stems, anthers, young seeds300 mg20 mg
Plant tissues (low nucleotide yield): roots, fruits, pericarp, mature seeds, high wax/lignin300 mg100 mg
Human/Animal tissues (high yield): liver, spleen, thymus, heart, brain, lungs, kidneys50 mg10 mg
Human/Animal tissues (low yield): skin, bone, fat200 mg100 mg
Cell SamplesBlood Cells1 ml0.5 ml
Fresh cultured cells5×10⁶ cells1×10⁶ cells
MicroorganismsBacteria
Fungi5×10⁶ cells or 0.3 g1×10⁶ cells or 50 mg
RNATotal RNAConcentration ≥50 ng/μl; Total Amount ≥2 μg; Volume ≥15 μl; RIN ≥6

Sample Requirements for Microbiome

Sample Class Sample Type 16S Sequencing Metagenome Sequencing
Recommended Minimum Recommended Minimum
SolidFeces, Intestinal Contents2 g500 mg200 mg500 mg
Swab10 pieces4 pieces10 pieces5 pieces
Tissue1 g500 mg//
Water Body Filter Membrane (0.22–0.45 μm, ø 3–4 cm)2 pieces1 piece3 pieces1 piece
Soil, Sludge, Sediment, Humus3 g0.5 g500 mg200 mg
LiquidRumen Fluid, Fermentation Broth, Tissue Fluid3 ml, precipitate 1 g1 ml, precipitate 0.5 g5 ml, precipitate 300 mg1 ml, precipitate 100 mg
Saliva5 ml3 ml5 ml3 ml
DNAConc. ≥5 ng/μl; Total ≥150 ng; Vol. ≥30 μl; OD 1.8–2.0Conc. ≥10 ng/μl; Total ≥500 ng; Vol. ≥50 μl; OD 1.8–2.0

Sampling Guideline

Representative Sample Sampling Method
SerumCollect whole blood using serum separation tubes with clot activator. Allow to clot at room temperature for 60 minutes (do not shake). Centrifuge at 3000 rpm for 10 min at 4°C. Aliquot 200 μl supernatant into pre-labeled 2 ml tubes. Snap freeze in liquid nitrogen for 5–10 min, store at -80°C.
PlasmaCollect whole blood using anticoagulant tubes (EDTA, heparin, or citrate). Mix gently by inversion. Centrifuge at 3000 rpm for 10 min at 4°C. Aliquot 200 μl supernatant into pre-labeled 2 ml tubes. Snap freeze in liquid nitrogen for 5–10 min, store at -80°C.
TissueRinse tissue briefly with PBS to remove blood/debris. Snap freeze in liquid nitrogen within 30 min of collection. Store at -80°C. Do not use RNAlater for metabolomics (it interferes with detection).
UrineCollect mid-stream urine. Centrifuge at 4000 rpm for 10 min at 4°C to remove cells/debris. Aliquot supernatant and freeze at -80°C.
CellsWash cells 2–3 times with cold PBS. Snap freeze cell pellet in liquid nitrogen. Store at -80°C. Minimum 1×10⁶ cells recommended.
FecesCollect fresh fecal samples. Freeze immediately in liquid nitrogen. Store at -80°C. Avoid freeze-thaw cycles. For microbiome, use sterile collection tubes.

Shipping Guideline

  1. Dry Ice Booking: Book sufficient dry ice. Prepare at least 5 kg of dry ice for each transit day.
  2. Sample Collection: Use appropriate tubes. Different services require separate tubes. Label clearly with markers that won't erase. Wrap tube cap with parafilm.
  3. Sample Packaging: Wrap tubes in absorbent paper towels. Place in separate sealed plastic bags. Wrap each bag in bubble wrap.
  4. Sample Information Form (SIF): Print and complete the SIF. Tube labels must match SIF labels. Place in sealed plastic bag inside the shipment.
  5. Box Preparation: Place tubes and SIF in a polystyrene box with sufficient dry ice. Fill empty space with bubble wrap or packing material.
  6. External Packaging: Place polystyrene box in a slightly larger cardboard box. Seal with packing tape. Affix a "Dry Ice" label to the outside.
  7. Shipping Service: Use Next-Day delivery.
  8. Notification: Email completed SIF, purchase order/quote, and tracking number to support-global@metwarebio.com.
  9. Shipping Address:
    Attn: Rui He
    8A Henshaw Street, Woburn, MA 01801, USA
    (781) 975-1541
    Support-global@metwarebio.com

Frequently Asked Questions

For untargeted metabolomics, the recommended amount is 100 μl per sample, with a minimum of 20 μl. For targeted panels (e.g., steroid hormones, oxylipins), you may need 50–100 μl. Always provide extra volume if possible to allow for repeat analysis.
For DIA proteomics, the minimum sample amount depends on the tissue type. For normal animal tissues (liver, spleen, etc.), the minimum is 5 mg. For fatty tissue or skin, the minimum is 100 mg. For serum/plasma (without enrichment), as little as 1 μl is acceptable.
Wrap sample tubes in absorbent paper and sealed bags, then in bubble wrap. Place in a polystyrene box with at least 5 kg of dry ice per transit day. Put the polystyrene box inside a cardboard box, seal it, and attach a "Dry Ice" label. Use Next-Day delivery and email the tracking number to support-global@metwarebio.com.
A minimum of 3 biological replicates is required for all sample types. For animal studies, we recommend 3–6 replicates. For clinical samples, 6–10 replicates are recommended to account for individual variability.
If your sample type is not listed in our guidelines, please contact us. Our scientific team will evaluate your sample and provide specific guidance on collection, storage, and shipping requirements.

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