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Biomedical Sample Requirements for Metabolomics
Biological duplicates: A minimum of 3 replicates is required; 3–6 replicates for animal samples; 6–10 for clinical samples.
Biomedical Sample Classification
Liquid I Common
Plasma, Serum, Hemolymph, Whole Blood, Milk, Egg White
Liquid II
CSF, Interstitial Fluid, Uterine Fluid, Pancreatic Juice, Bile, Pleural Effusion, Follicular Fluid, Fallopian Tube Fluid, Postmortem Fluid, Culture Medium, Fermentation Broth, Tears, Bone Marrow (liquid)
Liquid III
Seminal Plasma, Amniotic Fluid, Prostatic Fluid, Rumen Fluid, Respiratory Condensate, Gastric Lavage, BALF, Urine, Sweat, Saliva, Sputum
Tissue I Common
Small Animal Tissues, Placenta, Blood Clot, Mycelium, Nematode, Zebrafish (whole fish), Bone Marrow (solid), Nail
Tissue II
Large Animal Tissues, Whole Insect Body, Wings, Pupa, Eggs, Large Fungi, Cartilage, Bone (solid)
Tissue III
Zebrafish Organs, Insect Organs, Whole Microinsect Body (e.g., Drosophila)
Solid I
Feces, Intestinal Contents, Lyophilized Fecal Powder
Solid II
Milk Powder, Microbial Fermentation Product (solid), Culture Medium (solid), Lyophilized Tissue/Plant/Egg Powder
Solid III
Honey, Nasal Mucus, Sputum, Fresh Egg Yolk
Solid IV
Sludge, Soil
Cell I Common
Adherent Cells, Animal Cell Lines
Cell II
E. Coli, Yeast Cells
Cell III
Small Amount of Fungal Mycelial Balls, Cyanobacteria, Large Amount of Bacteria, Slime Mold
Organelle I
Lysosomes, Mitochondria, Endoplasmic Reticulum
Organelle II
Exosomes, Extracellular Vesicles
Special Samples
Skin Tape/Patch, Test Strips, Swab, Hair
Sample Amount Requirements
| Sample Class | Recommended | Minimum | Untargeted (Plus) | TM Widely Targeted | Quant. Lipidomics |
|---|---|---|---|---|---|
| Liquid I | 100 μl | 20 μl | ✓ | ✓ | ✓ |
| Liquid II | 100 μl | 20 μl | ✓ | ✓ | ✓ |
| Liquid III | 500 μl | 50 μl | ✓ | ✓ | ✓ |
| Tissue I | 100 mg | 20 mg | ✓ | ✓ | ✓ |
| Tissue II | 500 mg | 20 mg | ✓ | ✓ | ✓ |
| Tissue III | 20 units | / | ✓ | ✓ | ✓ |
| Solid I | 200 mg | 20 mg | ✓ | ✓ | ✓ |
| Solid II | 100 mg | 20 mg | ✓ | ✓ | ✓ |
| Solid III | 100 mg | 20 mg | ✓ | ✓ | ✓ |
| Solid IV | 600 mg | 300 mg | ✓ | ✓ | ✓ |
| Cell I | 1×10⁶ | 5×10⁵ | ✓ | ✓ | ✓ |
| Cell II | 1×10¹⁰ | 5×10⁸ | ✓ | ✓ | ✓ |
| Cell III | 100 mg | / | ✓ | ✓ | ✓ |
| Organelle I | 4×10⁷ cells / 0.2g | 1×10⁷ cells / 0.1g | ✓ | ✓ | ✓ |
| Organelle II | 2×10⁹ / 40μg protein | 1×10⁹ / 20μg protein | ✓ | ✓ | ✓ |
| Special I–IV | 1–2 pieces | 1 piece | ✓ | ✓ | ✓ |
| Sample Class | Recommended | Minimum | Energy Metabolism | Tryptophan | One-Carbon | Amino Acids | Organic Acids |
|---|---|---|---|---|---|---|---|
| Liquid I | 100 μl | 20 μl | ✓ | ✓ | ✓ | ✓ | ✓ |
| Liquid II | 100 μl | 20 μl | 50–100 μl | ✓ | ✓ | ✓ | ✓ |
| Liquid III | 500 μl | 50 μl | ✓ | ✓ | ✓ | ✓ | ✓ |
| Tissue I/II | 100–500 mg | 20 mg | 50–100 mg | ✓ | ✓ | ✓ | ✓ |
| Solid I/II | 100–200 mg | 20 mg | 50–200 mg | ✓ | ✓ | ✓ | ✓ |
| Solid III | 100 mg | 20 mg | 0.5–2 g | 0.5–2 g | 0.5–2 g | 0.5–2 g | 0.5–2 g |
| Solid IV | 600 mg | 300 mg | ✓ | ✓ | ✓ | ✓ | ✓ |
| Cell I | 1×10⁶ | 5×10⁵ | ✓ | ✓ | ✓ | ✓ | ✓ |
| Cell II | 1×10¹⁰ | 5×10⁸ | ✓ | ✓ | ✓ | ✓ | ✓ |
| Organelle I/II | varies | varies | ✓ | ✓ | ✓ | ✓ | ✓ |
| Sample Class | Bile Acids | Neurotransmitters | Steroid Hormones | Oxylipins | SCFAs | FFAs | Sugars |
|---|---|---|---|---|---|---|---|
| Liquid I | ✓ | ✓ | 50–100 μl | 50–100 μl | 50–100 μl | 50–100 μl | ✓ |
| Liquid II | ✓ | 50–100 μl | 50–100 μl | ≥100 μl | 50–100 μl | 50–100 μl | ✓ |
| Liquid III | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ |
| Tissue I/II | ✓ | 50–100 mg | ✓ | ✓ | ✓ | ✓ | ✓ |
| Solid I–III | ✓ | 50–200 mg | 0.5–2 g | 0.5–2 g | 0.5–2 g | 0.5–2 g | 0.5–2 g |
| Solid IV | ✓ | 200–600 mg | ✓ | ✓ | ✓ | ✓ | 600 mg |
| Cell I | ✓ | ✓ | ✓ | ✓ | 1×10⁷–2×10⁷ | ✓ | 5×10⁶–1×10⁷ |
| Cell II | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ |
Plant Sample Requirements for Metabolomics
Plant duplicates: A minimum of 3 replicates is required.
Plant Sample Classification
Tissue Common
Root, Stem, Leaf, Fruit, Flower, Bud, Node, Callus, Seed
Liquid I
Root Exudate
Liquid II
Wine
Liquid III
Juice, Fermentation Broth
Liquid IV
Oils, Essential Oils, Honey, Nectar, Paste
Liquid V
Herb Extract, Herb Decoction, Plant Tissue Fluid, Phloem Sap, Leaf Intercellular Fluid
Cell
Fungal Mycelial Balls/Mycelium, Unicellular Algae, Bacteria (Pellet), Slime Mold
Organelle
Plant-derived Exosome-like Nanoparticles
Solid I
Lyophilized Plant Powder
Solid II
Sludge, Soil
Plant Sample Amount Requirements
| Sample Class | Recommended | Minimum | Widely Targeted / Flavonoid | Quant. Lipidomics | Plant Hormones | Carotenoid | Anthocyanin | Sugars | Org. Acids / AA | Energy | SCFAs | FFAs |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Tissue | 600 mg | 300 mg | ✓ | ✓ | 100–300 mg | ✓ | ✓ | ✓ | ✓ | 200–300 mg | 200–300 mg | 200–300 mg |
| Liquid I | 10 ml | 3 ml | ✓ | 200–500 μl | 2 mL | 2 mL | 2 mL | 2 mL | 2 mL | 100 μl–2 mL | 2 mL | |
| Liquid II | 5 ml | 50 μl | ✓ | 200–500 μl | 2 mL | 2 mL | 2 mL | 2 mL | 2 mL | 100 μl–2 mL | 2 mL | |
| Liquid III | 5 ml | 50 μl | ✓ | 200–500 μl | 50–200 μl | 100–500 μl | 100–500 μl | 100–500 μl | 100–200 μl | 50–200 μl | 50–200 μl | |
| Liquid IV | 500 μl | 100 μl | ✓ | 10–100 mg | 50–200 μl | 100–500 μl | 100–500 μl | 100–500 μl | 100–200 μl | 50–200 μl | 50–200 μl | |
| Liquid V | 500 μl | 200 μl | ✓ | ✓ | 50–200 μl | 100–500 μl | 100–500 μl | 100–500 μl | 100–200 μl | 50–200 μl | 50–200 μl | |
| Cell | 100 mg | / | ✓ | 20–100 mg | / | 500–600 mg | / | ✓ | ✓ | ✓ | ✓ | ✓ |
| Organelle | 2×10⁹ / 40μg | 1×10⁹ / 20μg | ✓ | ✓ | / | / | / | / | / | / | / | / |
| Solid I | 600 mg | 200 mg | ✓ | ✓ | / | ✓ | ✓ | 20–100 mg | 50–100 mg | 50–100 mg | 20–100 mg | 20–100 mg |
| Solid II | 600 mg | 300 mg | ✓ | / | / | / | / | 600 mg | ✓ | ✓ | ✓ | ✓ |
Sample Requirements for Proteomics
| Sample Type | DIA / DDA | Label-free Peptidomics | Phosphorylation | Ubi/Ac/Suc | Lactylation | N-Glycosylation | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Rec. | Min. | Rec. | Min. | Rec. | Min. | Rec. | Min. | Rec. | Min. | Rec. | Min. | |
|
Normal Tissues ▼
Heart, Liver, Spleen, Lung, Kidney, Brain, Intestine, Stomach, Pancreas, Gallbladder, Testis, Ovary, Breast, Prostate, Thyroid, Adrenal Gland, Lymph, Muscle, Blood Vessel
|
20 mg | 5 mg | 100 mg | 50 mg | 30 mg | 15 mg | 100 mg | 50 mg | 150 mg | 75 mg | 25 mg | 15 mg |
| Fatty Tissue, Skin, Synovium | 200 mg | 100 mg | 1 g | 500 mg | 300 mg | 150 mg | / | / | / | / | / | / |
| Bone, Shell, Eggshell | 1 g | 500 mg | 1 g | 500 mg | / | / | / | / | / | / | / | / |
| Cartilage Tissue | 400 mg | 150 mg | 1 g | 500 mg | / | / | / | / | / | / | / | / |
| Hair | 500 mg | 200 mg | 1 g | 500 mg | / | / | / | / | / | / | / | / |
| Red Bone Marrow | 20 mg | 5 mg | / | / | 30 mg | 15 mg | 100 mg | 50 mg | 150 mg | 75 mg | 30 mg | 15 mg |
| Yellow Bone Marrow | 50 mg | 20 mg | / | / | 50 mg | 30 mg | 200 mg | 100 mg | 200 mg | 100 mg | 50 mg | 30 mg |
|
Soft-bodied Insects ▼
Fruit Flies, etc.
|
30 mg | 5 mg | / | / | 30 mg | 15 mg | 100 mg | 50 mg | 150 mg | 75 mg | 30 mg | 15 mg |
| Sample Type | DIA / DDA | Label-free | Phosphorylation | Ubi/Ac/Suc | Lactylation | N-Glyco | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Rec. | Min. | Rec. | Min. | Rec. | Min. | Rec. | Min. | Rec. | Min. | Rec. | Min. | |
| Young Tissue (Leaves, Petals, Callus) | 50 mg | 20 mg | 200 mg | 100 mg | 200 mg | 100 mg | 1 g | 500 mg | 1 g | 500 mg | 100 mg | 50 mg |
| Mature Tissue, Stems, Algae, Fungi | 500 mg | 200 mg | 2 g | 1.5 g | 500 mg | 300 mg | 2 g | 1 g | 2 g | 1 g | 250 mg | 150 mg |
| Bark, Roots, Fruits, Tubers | 1 g | 500 mg | 2 g | 1.5 g | 3 g | 1.5 g | 5 g | 3 g | 5 g | 3 g | 1.5 g | 1 g |
| Pollen, Anthers | 40 mg | 15 mg | / | / | / | / | / | / | / | / | / | / |
| Lyophilized Plant Powder | 300 mg | 150 mg | / | / | / | / | / | / | / | / | / | / |
| Sample Type | DIA / DDA | Label-free | Phosphorylation | Ubi/Ac/Suc | Lactylation | N-Glyco | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Rec. | Min. | Rec. | Min. | Rec. | Min. | Rec. | Min. | Rec. | Min. | Rec. | Min. | |
| Primary Cells | 3×10⁶ | 1×10⁶ | 1×10⁷ | 5×10⁶ | 2×10⁷ | 1×10⁷ | 2×10⁷ | 2×10⁷ | 3×10⁷ | 1.5×10⁷ | 2×10⁷ | 1×10⁷ |
| Serum/Plasma (no enrichment) | 10 μl | 1 μl | 200 μl | 50 μl | / | / | / | / | / | / | 50 μl | 10 μl |
| Urine | 5 ml | 2 ml | 20 ml | 10 ml | / | / | / | / | / | / | / | / |
| Bacteria | 100 mg | 50 mg | 300 mg | 150 mg | 300 mg | 150 mg | 500 mg | 200 mg | 500 mg | 200 mg | 150 mg | 75 mg |
| FFPE Section | 15 slides (5–10 μm) | / | / | / | / | / | / | / | / | / | / | |
| Extracted Protein | 100 μg | 50 μg | / | / | 500 μg | 200 μg | 5 mg | 3 mg | 6 mg | 4 mg | 500 μg | 250 μg |
Sample Requirements for DIA Proteomics: IP, Pull-down, and SDS-PAGE Derived Samples
| Technology | Acceptable Sample Types | Sample Requirements | Our Intake | MS-compatibility Notes | Recommended Controls |
|---|---|---|---|---|---|
| IP / Co-IP / Pull-down | Bead–Ab/bait–target complexes (bead pellet) | Submit 20 μL bead pellets. Perform IP/PD from ~1×10⁷ cells. After final wash, rinse beads with PBS, remove excess liquid, ship on dry ice. | On-bead digestion → LC-MS/MS | Indicate the antibody used (host/isotype/clone) or pull-down bait format. | Isotype IgG, beads-only, Input/Flow-through |
| Eluates (acid/peptide/competitive/denaturing) | Submit ≤50 μL eluate with ~10–20 μg total protein. Use mild MS-compatible elution buffer. Do NOT use Laemmli buffer. | Buffer exchange → digestion → LC-MS/MS | Specify elution buffer composition. If high SDS, we perform acetone precipitation. | Bait-only resin, free-ligand competition | |
| SDS-PAGE | Gel bands (clean excised pieces) | Target band(s) clearly visible. Load ≥10 μg/lane. Provide gel image with MW marker. Ship with icepacks. | In-gel digestion → LC-MS/MS | Prefer Coomassie staining | Blank gel piece and/or neighboring band as control |
Sample Requirements for Transcriptomics
| Sample Class | Sample Type | Recommended | Minimum |
|---|---|---|---|
| Tissue Samples | Plant tissues (high nucleotide yield): young leaves, flowers, stems, anthers, young seeds | 300 mg | 20 mg |
| Plant tissues (low nucleotide yield): roots, fruits, pericarp, mature seeds, high wax/lignin | 300 mg | 100 mg | |
| Human/Animal tissues (high yield): liver, spleen, thymus, heart, brain, lungs, kidneys | 50 mg | 10 mg | |
| Human/Animal tissues (low yield): skin, bone, fat | 200 mg | 100 mg | |
| Cell Samples | Blood Cells | 1 ml | 0.5 ml |
| Fresh cultured cells | 5×10⁶ cells | 1×10⁶ cells | |
| Microorganisms | Bacteria | — | — |
| Fungi | 5×10⁶ cells or 0.3 g | 1×10⁶ cells or 50 mg | |
| RNA | Total RNA | Concentration ≥50 ng/μl; Total Amount ≥2 μg; Volume ≥15 μl; RIN ≥6 | |
Sample Requirements for Microbiome
| Sample Class | Sample Type | 16S Sequencing | Metagenome Sequencing | ||
|---|---|---|---|---|---|
| Recommended | Minimum | Recommended | Minimum | ||
| Solid | Feces, Intestinal Contents | 2 g | 500 mg | 200 mg | 500 mg |
| Swab | 10 pieces | 4 pieces | 10 pieces | 5 pieces | |
| Tissue | 1 g | 500 mg | / | / | |
| Water Body Filter Membrane (0.22–0.45 μm, ø 3–4 cm) | 2 pieces | 1 piece | 3 pieces | 1 piece | |
| Soil, Sludge, Sediment, Humus | 3 g | 0.5 g | 500 mg | 200 mg | |
| Liquid | Rumen Fluid, Fermentation Broth, Tissue Fluid | 3 ml, precipitate 1 g | 1 ml, precipitate 0.5 g | 5 ml, precipitate 300 mg | 1 ml, precipitate 100 mg |
| Saliva | 5 ml | 3 ml | 5 ml | 3 ml | |
| DNA | Conc. ≥5 ng/μl; Total ≥150 ng; Vol. ≥30 μl; OD 1.8–2.0 | Conc. ≥10 ng/μl; Total ≥500 ng; Vol. ≥50 μl; OD 1.8–2.0 | |||
Sampling Guideline
| Representative Sample | Sampling Method |
|---|---|
| Serum | Collect whole blood using serum separation tubes with clot activator. Allow to clot at room temperature for 60 minutes (do not shake). Centrifuge at 3000 rpm for 10 min at 4°C. Aliquot 200 μl supernatant into pre-labeled 2 ml tubes. Snap freeze in liquid nitrogen for 5–10 min, store at -80°C. |
| Plasma | Collect whole blood using anticoagulant tubes (EDTA, heparin, or citrate). Mix gently by inversion. Centrifuge at 3000 rpm for 10 min at 4°C. Aliquot 200 μl supernatant into pre-labeled 2 ml tubes. Snap freeze in liquid nitrogen for 5–10 min, store at -80°C. |
| Tissue | Rinse tissue briefly with PBS to remove blood/debris. Snap freeze in liquid nitrogen within 30 min of collection. Store at -80°C. Do not use RNAlater for metabolomics (it interferes with detection). |
| Urine | Collect mid-stream urine. Centrifuge at 4000 rpm for 10 min at 4°C to remove cells/debris. Aliquot supernatant and freeze at -80°C. |
| Cells | Wash cells 2–3 times with cold PBS. Snap freeze cell pellet in liquid nitrogen. Store at -80°C. Minimum 1×10⁶ cells recommended. |
| Feces | Collect fresh fecal samples. Freeze immediately in liquid nitrogen. Store at -80°C. Avoid freeze-thaw cycles. For microbiome, use sterile collection tubes. |
Shipping Guideline
- Dry Ice Booking: Book sufficient dry ice. Prepare at least 5 kg of dry ice for each transit day.
- Sample Collection: Use appropriate tubes. Different services require separate tubes. Label clearly with markers that won't erase. Wrap tube cap with parafilm.
- Sample Packaging: Wrap tubes in absorbent paper towels. Place in separate sealed plastic bags. Wrap each bag in bubble wrap.
- Sample Information Form (SIF): Print and complete the SIF. Tube labels must match SIF labels. Place in sealed plastic bag inside the shipment.
- Box Preparation: Place tubes and SIF in a polystyrene box with sufficient dry ice. Fill empty space with bubble wrap or packing material.
- External Packaging: Place polystyrene box in a slightly larger cardboard box. Seal with packing tape. Affix a "Dry Ice" label to the outside.
- Shipping Service: Use Next-Day delivery.
- Notification: Email completed SIF, purchase order/quote, and tracking number to support-global@metwarebio.com.
- Shipping Address:
Attn: Rui He
8A Henshaw Street, Woburn, MA 01801, USA
(781) 975-1541
Support-global@metwarebio.com
Frequently Asked Questions
For untargeted metabolomics, the recommended amount is 100 μl per sample, with a minimum of 20 μl. For targeted panels (e.g., steroid hormones, oxylipins), you may need 50–100 μl. Always provide extra volume if possible to allow for repeat analysis.
For DIA proteomics, the minimum sample amount depends on the tissue type. For normal animal tissues (liver, spleen, etc.), the minimum is 5 mg. For fatty tissue or skin, the minimum is 100 mg. For serum/plasma (without enrichment), as little as 1 μl is acceptable.
Wrap sample tubes in absorbent paper and sealed bags, then in bubble wrap. Place in a polystyrene box with at least 5 kg of dry ice per transit day. Put the polystyrene box inside a cardboard box, seal it, and attach a "Dry Ice" label. Use Next-Day delivery and email the tracking number to support-global@metwarebio.com.
A minimum of 3 biological replicates is required for all sample types. For animal studies, we recommend 3–6 replicates. For clinical samples, 6–10 replicates are recommended to account for individual variability.
If your sample type is not listed in our guidelines, please contact us. Our scientific team will evaluate your sample and provide specific guidance on collection, storage, and shipping requirements.
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